Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1546593 chr3:80592064 T/C 0.000124 177 19.87 24.03 27.4 KM Plot
PCPG rs1551129 chr2:2653008 C/T 1.04E-8 175 26.57 17.52 3.63 KM Plot
PCPG rs15580 chr6:26546048 C/T 6.12E-7 178 10.68 32.6 24.53 KM Plot
PCPG rs1559552 chr2:118670212 T/C 1.68E-5 177 25.28 30.93 11.65 KM Plot
PCPG rs1560535 chr2:236193395 T/C 2.6E-7 174 25.97 24.7 3.07 KM Plot
PCPG rs1569134 chr7:105158228 T/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs1571457 chr10:131958960 T/G 0 178 25.53 24.47 3.17 KM Plot
PCPG rs1581406 chr2:209965670 T/C 1.34E-9 177 19.87 24.1 26.57 KM Plot
PCPG rs1584300 chr2:61586001 A/C 6.1E-5 178 24.1 30.18 10.3 KM Plot
PCPG rs1584301 chr2:61586132 C/T 2.81E-5 178 23.15 29.43 23.43 KM Plot
PCPG rs1595735 chr2:209971726 T/A 1.34E-9 177 19.87 24.1 26.57 KM Plot
PCPG rs1602448 chr13:64106818 A/G 6.87E-8 178 25.77 23.08 18.13 KM Plot
PCPG rs162257 chr17:3259421 T/C 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs162258 chr17:3264180 A/G 0.000226 171 18.1 25.43 27.2 KM Plot
PCPG rs1629583 chr13:37654358 G/A 0.000303 176 4.17 23.88 25.97 KM Plot